Half Title Page.
Other Front Matter.
Methods In Enzymology.
1: Preparation and Genomic Analyses of Single Cells from Natural Populations.
2: In-solution Fluorescence In Situ Hybridization and Fluorescence-activated Cell Sorting for Single Cell and Population Genome Recovery.
3: Whole Cell Immunomagnetic Enrichment of Environmental Microbial Consortia Using Rrna-targeted Magneto-fish.
4: Coupling FACS and Genomic Methods for the Characterization of Uncultivated Symbionts.
5: Optofluidic Cell Selection from Complex Microbial Communities for Single-genome Analysis.
6: Quantifying and Identifying the Active and Damaged Subsets of Indigenous Microbial Communities.
7: Microbial Community Genomics—sampling, Metagenomic Library Preparation, and Analysis.
8: Preparation of BAC Libraries from Marine Microbial Populations.
9: Preparation of Fosmid Libraries and Functional Metagenomic Analysis of Microbial Community DNA.
10: Preparation of Metagenomic Libraries from Naturally Occurring Marine Viruses.
11: Microbial Community Transcriptomics—sample Preparation, Cdna Library Construction, and Analysis.
12: Preparation and Metatranscriptomic Analyses of Host–microbe Systems.
13: Preparation of Microbial Community Cdna for Metatranscriptomic Analysis in Marine Plankton.
14: Sequential Isolation of Metabolites, RNA, DNA, and Proteins from the Same Unique Sample.
15: Use of Internal Standards for Quantitative Metatranscriptome and Metagenome Analysis.
16: Sample Processing and Cdna Preparation for Microbial Metatranscriptomics in Complex Soil Communities.
17: Microbial Community Proteomics—sampling, Sample Preparation, Spectral Analysis, and Interpretation.
18: Sample Preparation and Processing for Planktonic Microbial Community Proteomics.
19: Sample Handling and Mass Spectrometry for Microbial Metaproteomic Analyses.
20: Molecular Tools for Investigating Microbial Community Structure and Function in Oxygen-deficient Marine Waters.
21: Microbial Community Informatics: Computational Platforms, Comparative Analyses, and Statistics.
22: Assembling Full-length Rrna Genes from Short-read Metagenomic Sequence Datasets Using EMIRGE.
23: Computational Methods for High-throughput Comparative Analyses of Natural Microbial Communities.
24: Advancing Our Understanding of the Human Microbiome Using QIIME.
25: Disentangling Associated Genomes.
26: Microbial Community Analysis Using MEGAN.
27: A Metagenomics Portal for a Democratized Sequencing World.
28: A User’s Guide to Quantitative and Comparative Analysis of Metagenomic Datasets.